>>> py3-kallisto: Building community/py3-kallisto 1.0.10-r2 (using abuild 3.15.0_rc3-r1) started Mon, 28 Apr 2025 23:28:11 +0000 >>> py3-kallisto: Validating /home/buildozer/aports/community/py3-kallisto/APKBUILD... >>> py3-kallisto: Analyzing dependencies... >>> py3-kallisto: Installing for build: build-base python3 py3-click py3-numpy py3-scipy py3-poetry-core py3-gpep517 py3-wheel py3-pytest py3-pytest-runner (1/64) Installing libbz2 (1.0.8-r6) (2/64) Installing libffi (3.4.8-r0) (3/64) Installing gdbm (1.24-r0) (4/64) Installing xz-libs (5.8.1-r0) (5/64) Installing mpdecimal (4.0.0-r0) (6/64) Installing libpanelw (6.5_p20250412-r0) (7/64) Installing sqlite-libs (3.49.1-r1) (8/64) Installing python3 (3.12.10-r0) (9/64) Installing python3-pycache-pyc0 (3.12.10-r0) (10/64) Installing pyc (3.12.10-r0) (11/64) Installing python3-pyc (3.12.10-r0) (12/64) Installing py3-click (8.1.8-r0) (13/64) Installing py3-click-pyc (8.1.8-r0) (14/64) Installing libquadmath (14.2.0-r5) (15/64) Installing libgfortran (14.2.0-r5) (16/64) Installing openblas (0.3.28-r0) (17/64) Installing py3-numpy (2.2.4-r0) (18/64) Installing py3-numpy-tests (2.2.4-r0) (19/64) Installing py3-numpy-pyc (2.2.4-r0) (20/64) Installing py3-parsing (3.2.0-r0) (21/64) Installing py3-parsing-pyc (3.2.0-r0) (22/64) Installing py3-packaging (25.0-r0) (23/64) Installing py3-packaging-pyc (25.0-r0) (24/64) Installing py3-platformdirs (4.3.7-r0) (25/64) Installing py3-platformdirs-pyc (4.3.7-r0) (26/64) Installing py3-certifi (2024.12.14-r0) (27/64) Installing py3-certifi-pyc (2024.12.14-r0) (28/64) Installing py3-charset-normalizer (3.4.1-r0) (29/64) Installing py3-charset-normalizer-pyc (3.4.1-r0) (30/64) Installing py3-idna (3.10-r0) (31/64) Installing py3-idna-pyc (3.10-r0) (32/64) Installing py3-urllib3 (1.26.20-r0) (33/64) Installing py3-urllib3-pyc (1.26.20-r0) (34/64) Installing py3-requests (2.32.3-r0) (35/64) Installing py3-requests-pyc (2.32.3-r0) (36/64) Installing py3-pooch (1.8.2-r1) (37/64) Installing py3-pooch-pyc (1.8.2-r1) (38/64) Installing py3-scipy (1.13.1-r1) (39/64) Installing py3-scipy-pyc (1.13.1-r1) (40/64) Installing py3-fastjsonschema (2.21.1-r0) (41/64) Installing py3-fastjsonschema-pyc (2.21.1-r0) (42/64) Installing py3-lark-parser (1.1.9-r1) (43/64) Installing py3-lark-parser-pyc (1.1.9-r1) (44/64) Installing py3-poetry-core (2.0.1-r0) (45/64) Installing py3-poetry-core-pyc (2.0.1-r0) (46/64) Installing py3-installer (0.7.0-r2) (47/64) Installing py3-installer-pyc (0.7.0-r2) (48/64) Installing py3-gpep517 (16-r0) (49/64) Installing py3-gpep517-pyc (16-r0) (50/64) Installing py3-wheel (0.43.0-r0) (51/64) Installing py3-wheel-pyc (0.43.0-r0) (52/64) Installing py3-iniconfig (2.1.0-r0) (53/64) Installing py3-iniconfig-pyc (2.1.0-r0) (54/64) Installing py3-pluggy (1.5.0-r0) (55/64) Installing py3-pluggy-pyc (1.5.0-r0) (56/64) Installing py3-py (1.11.0-r4) (57/64) Installing py3-py-pyc (1.11.0-r4) (58/64) Installing py3-pytest (8.3.5-r0) (59/64) Installing py3-pytest-pyc (8.3.5-r0) (60/64) Installing py3-setuptools (77.0.3-r0) (61/64) Installing py3-setuptools-pyc (77.0.3-r0) (62/64) Installing py3-pytest-runner (6.0.1-r1) (63/64) Installing py3-pytest-runner-pyc (6.0.1-r1) (64/64) Installing .makedepends-py3-kallisto (20250428.232900) Executing busybox-1.37.0-r16.trigger OK: 592 MiB in 167 packages >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Cleaning up tmpdir >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/kallisto-1.0.10.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-kallisto: Fetching https://github.com/AstraZeneca/kallisto/archive/v1.0.10/kallisto-1.0.10.tar.gz Connecting to github.com (140.82.121.3:443) Connecting to codeload.github.com (140.82.121.9:443) saving to '/var/cache/distfiles/v3.22/kallisto-1.0.10.tar.gz.part' kallisto-1.0.10.tar. 100% |********************************| 158k 0:00:00 ETA '/var/cache/distfiles/v3.22/kallisto-1.0.10.tar.gz.part' saved >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/kallisto-1.0.10.tar.gz >>> py3-kallisto: Checking sha512sums... kallisto-1.0.10.tar.gz: OK poetry.patch: OK >>> py3-kallisto: Unpacking /var/cache/distfiles/v3.22/kallisto-1.0.10.tar.gz... >>> py3-kallisto: poetry.patch patching file pyproject.toml 2025-04-28 23:29:04,277 gpep517 INFO Building wheel via backend poetry.core.masonry.api 2025-04-28 23:29:04,431 poetry.core.factory WARNING The "poetry.dev-dependencies" section is deprecated and will be removed in a future version. Use "poetry.group.dev.dependencies" instead. 2025-04-28 23:29:04,539 poetry.core.masonry.builders.wheel INFO Building wheel 2025-04-28 23:29:04,611 poetry.core.masonry.builders.wheel INFO Built kallisto-1.0.10-py3-none-any.whl 2025-04-28 23:29:04,612 gpep517 INFO The backend produced .dist/kallisto-1.0.10-py3-none-any.whl kallisto-1.0.10-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.10, pytest-8.3.5, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-kallisto/src/kallisto-1.0.10 configfile: pyproject.toml collected 95 items tests/test_alp.py ... [ 3%] tests/test_atom.py ...... [ 9%] tests/test_bonds.py ... [ 12%] tests/test_cli.py ........................................... [ 57%] tests/test_cns.py ... [ 61%] tests/test_eeq.py ... [ 64%] tests/test_exs.py .. [ 66%] tests/test_grid.py . [ 67%] tests/test_lig.py . [ 68%] tests/test_molecule.py ............ [ 81%] tests/test_prox.py .. [ 83%] tests/test_rms.py . [ 84%] tests/test_stm.py . [ 85%] tests/test_strucreader.py ..... [ 90%] tests/test_vdw.py ........ [ 98%] tests/test_version.py . [100%] ============================== 95 passed in 3.47s ============================== >>> py3-kallisto: Entering fakeroot... >>> py3-kallisto-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/kallisto/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/data/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/data/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' >>> py3-kallisto-pyc*: Preparing subpackage py3-kallisto-pyc... >>> py3-kallisto-pyc*: Running postcheck for py3-kallisto-pyc >>> py3-kallisto*: Running postcheck for py3-kallisto >>> py3-kallisto*: Preparing package py3-kallisto... >>> py3-kallisto-pyc*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto-pyc*: Package size: 510.9 KB >>> py3-kallisto-pyc*: Compressing data... >>> py3-kallisto-pyc*: Create checksum... >>> py3-kallisto-pyc*: Create py3-kallisto-pyc-1.0.10-r2.apk >>> py3-kallisto*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto*: Package size: 390.1 KB >>> py3-kallisto*: Compressing data... >>> py3-kallisto*: Create checksum... >>> py3-kallisto*: Create py3-kallisto-1.0.10-r2.apk >>> py3-kallisto: Build complete at Mon, 28 Apr 2025 23:29:11 +0000 elapsed time 0h 1m 0s >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Uninstalling dependencies... (1/64) Purging .makedepends-py3-kallisto (20250428.232900) (2/64) Purging py3-click-pyc (8.1.8-r0) (3/64) Purging py3-click (8.1.8-r0) (4/64) Purging py3-scipy-pyc (1.13.1-r1) (5/64) Purging py3-scipy (1.13.1-r1) (6/64) Purging py3-pooch-pyc (1.8.2-r1) (7/64) Purging py3-pooch (1.8.2-r1) (8/64) Purging py3-platformdirs-pyc (4.3.7-r0) (9/64) Purging py3-platformdirs (4.3.7-r0) (10/64) Purging py3-requests-pyc (2.32.3-r0) (11/64) Purging py3-requests (2.32.3-r0) (12/64) Purging py3-certifi-pyc (2024.12.14-r0) (13/64) Purging py3-certifi (2024.12.14-r0) (14/64) Purging py3-charset-normalizer-pyc (3.4.1-r0) (15/64) Purging py3-charset-normalizer (3.4.1-r0) (16/64) Purging py3-idna-pyc (3.10-r0) (17/64) Purging py3-idna (3.10-r0) (18/64) Purging py3-urllib3-pyc (1.26.20-r0) (19/64) Purging py3-urllib3 (1.26.20-r0) (20/64) Purging py3-numpy-tests (2.2.4-r0) (21/64) Purging py3-numpy-pyc (2.2.4-r0) (22/64) Purging py3-numpy (2.2.4-r0) (23/64) Purging openblas (0.3.28-r0) (24/64) Purging py3-poetry-core-pyc (2.0.1-r0) (25/64) Purging py3-poetry-core (2.0.1-r0) (26/64) Purging py3-fastjsonschema-pyc (2.21.1-r0) (27/64) Purging py3-fastjsonschema (2.21.1-r0) (28/64) Purging py3-lark-parser-pyc (1.1.9-r1) (29/64) Purging py3-lark-parser (1.1.9-r1) (30/64) Purging py3-gpep517-pyc (16-r0) (31/64) Purging py3-gpep517 (16-r0) (32/64) Purging py3-installer-pyc (0.7.0-r2) (33/64) Purging py3-installer (0.7.0-r2) (34/64) Purging py3-wheel-pyc (0.43.0-r0) (35/64) Purging py3-wheel (0.43.0-r0) (36/64) Purging py3-pytest-runner-pyc (6.0.1-r1) (37/64) Purging py3-pytest-runner (6.0.1-r1) (38/64) Purging py3-pytest-pyc (8.3.5-r0) (39/64) Purging py3-pytest (8.3.5-r0) (40/64) Purging py3-iniconfig-pyc (2.1.0-r0) (41/64) Purging py3-iniconfig (2.1.0-r0) (42/64) Purging py3-pluggy-pyc (1.5.0-r0) (43/64) Purging py3-pluggy (1.5.0-r0) (44/64) Purging py3-py-pyc (1.11.0-r4) (45/64) Purging py3-py (1.11.0-r4) (46/64) Purging py3-setuptools-pyc (77.0.3-r0) (47/64) Purging py3-setuptools (77.0.3-r0) (48/64) Purging py3-packaging-pyc (25.0-r0) (49/64) Purging py3-packaging (25.0-r0) (50/64) Purging py3-parsing-pyc (3.2.0-r0) (51/64) Purging py3-parsing (3.2.0-r0) (52/64) Purging python3-pyc (3.12.10-r0) (53/64) Purging python3-pycache-pyc0 (3.12.10-r0) (54/64) Purging pyc (3.12.10-r0) (55/64) Purging python3 (3.12.10-r0) (56/64) Purging gdbm (1.24-r0) (57/64) Purging libbz2 (1.0.8-r6) (58/64) Purging libffi (3.4.8-r0) (59/64) Purging libgfortran (14.2.0-r5) (60/64) Purging libpanelw (6.5_p20250412-r0) (61/64) Purging libquadmath (14.2.0-r5) (62/64) Purging mpdecimal (4.0.0-r0) (63/64) Purging sqlite-libs (3.49.1-r1) (64/64) Purging xz-libs (5.8.1-r0) Executing busybox-1.37.0-r16.trigger OK: 400 MiB in 103 packages >>> py3-kallisto: Updating the community/x86 repository index... >>> py3-kallisto: Signing the index...