>>> py3-kallisto: Building community/py3-kallisto 1.0.10-r2 (using abuild 3.16.0_rc4-r0) started Mon, 20 Oct 2025 08:50:31 +0000 >>> py3-kallisto: Validating /home/buildozer/aports/community/py3-kallisto/APKBUILD... >>> py3-kallisto: Analyzing dependencies... >>> py3-kallisto: Installing for build: build-base python3 py3-click py3-numpy py3-scipy py3-poetry-core py3-gpep517 py3-wheel py3-pytest py3-pytest-runner ( 1/66) Installing libbz2 (1.0.8-r6) ( 2/66) Installing libffi (3.5.2-r0) ( 3/66) Installing gdbm (1.26-r0) ( 4/66) Installing xz-libs (5.8.1-r0) ( 5/66) Installing mpdecimal (4.0.1-r0) ( 6/66) Installing libpanelw (6.5_p20251010-r0) ( 7/66) Installing sqlite-libs (3.50.4-r1) ( 8/66) Installing python3 (3.12.12-r0) ( 9/66) Installing python3-pycache-pyc0 (3.12.12-r0) (10/66) Installing pyc (3.12.12-r0) (11/66) Installing python3-pyc (3.12.12-r0) (12/66) Installing py3-click (8.1.8-r1) (13/66) Installing py3-click-pyc (8.1.8-r1) (14/66) Installing libquadmath (15.2.0-r1) (15/66) Installing libgfortran (15.2.0-r1) (16/66) Installing openblas (0.3.30-r0) (17/66) Installing py3-numpy (2.3.2-r0) (18/66) Installing py3-numpy-tests (2.3.2-r0) (19/66) Installing py3-numpy-pyc (2.3.2-r0) (20/66) Installing py3-parsing (3.2.3-r0) (21/66) Installing py3-parsing-pyc (3.2.3-r0) (22/66) Installing py3-packaging (25.0-r0) (23/66) Installing py3-packaging-pyc (25.0-r0) (24/66) Installing py3-platformdirs (4.5.0-r0) (25/66) Installing py3-platformdirs-pyc (4.5.0-r0) (26/66) Installing py3-certifi (2025.10.5-r0) (27/66) Installing py3-certifi-pyc (2025.10.5-r0) (28/66) Installing py3-charset-normalizer (3.4.3-r0) (29/66) Installing py3-charset-normalizer-pyc (3.4.3-r0) (30/66) Installing py3-idna (3.10-r0) (31/66) Installing py3-idna-pyc (3.10-r0) (32/66) Installing py3-urllib3 (1.26.20-r0) (33/66) Installing py3-urllib3-pyc (1.26.20-r0) (34/66) Installing py3-requests (2.32.5-r0) (35/66) Installing py3-requests-pyc (2.32.5-r0) (36/66) Installing py3-pooch (1.8.2-r1) (37/66) Installing py3-pooch-pyc (1.8.2-r1) (38/66) Installing py3-scipy (1.16.1-r1) (39/66) Installing py3-scipy-pyc (1.16.1-r1) (40/66) Installing py3-fastjsonschema (2.21.2-r0) (41/66) Installing py3-fastjsonschema-pyc (2.21.2-r0) (42/66) Installing py3-lark-parser (1.2.2-r0) (43/66) Installing py3-lark-parser-pyc (1.2.2-r0) (44/66) Installing py3-poetry-core (2.1.3-r0) (45/66) Installing py3-poetry-core-pyc (2.1.3-r0) (46/66) Installing py3-installer (0.7.0-r2) (47/66) Installing py3-installer-pyc (0.7.0-r2) (48/66) Installing py3-gpep517 (19-r0) (49/66) Installing py3-gpep517-pyc (19-r0) (50/66) Installing py3-wheel (0.46.1-r0) (51/66) Installing py3-wheel-pyc (0.46.1-r0) (52/66) Installing py3-iniconfig (2.1.0-r0) (53/66) Installing py3-iniconfig-pyc (2.1.0-r0) (54/66) Installing py3-pluggy (1.6.0-r0) (55/66) Installing py3-pluggy-pyc (1.6.0-r0) (56/66) Installing py3-py (1.11.0-r4) (57/66) Installing py3-py-pyc (1.11.0-r4) (58/66) Installing py3-pygments (2.19.2-r0) (59/66) Installing py3-pygments-pyc (2.19.2-r0) (60/66) Installing py3-pytest (8.4.2-r1) (61/66) Installing py3-pytest-pyc (8.4.2-r1) (62/66) Installing py3-setuptools (80.9.0-r1) (63/66) Installing py3-setuptools-pyc (80.9.0-r1) (64/66) Installing py3-pytest-runner (6.0.1-r1) (65/66) Installing py3-pytest-runner-pyc (6.0.1-r1) (66/66) Installing .makedepends-py3-kallisto (20251020.085109) busybox-1.37.0-r24.trigger: Executing script... OK: 636 MiB in 171 packages >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Cleaning up tmpdir >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.23/kallisto-1.0.10.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-kallisto: Fetching https://github.com/AstraZeneca/kallisto/archive/v1.0.10/kallisto-1.0.10.tar.gz Connecting to github.com (140.82.121.4:443) Connecting to codeload.github.com (140.82.121.9:443) saving to '/var/cache/distfiles/v3.23/kallisto-1.0.10.tar.gz.part' kallisto-1.0.10.tar. 100% |********************************| 158k 0:00:00 ETA '/var/cache/distfiles/v3.23/kallisto-1.0.10.tar.gz.part' saved /var/cache/distfiles/v3.23/kallisto-1.0.10.tar.gz: OK /home/buildozer/aports/community/py3-kallisto/poetry.patch: OK >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.23/kallisto-1.0.10.tar.gz /var/cache/distfiles/v3.23/kallisto-1.0.10.tar.gz: OK /home/buildozer/aports/community/py3-kallisto/poetry.patch: OK >>> py3-kallisto: Unpacking /var/cache/distfiles/v3.23/kallisto-1.0.10.tar.gz... >>> py3-kallisto: poetry.patch patching file pyproject.toml 2025-10-20 08:51:12,167 gpep517 INFO Building wheel via backend poetry.core.masonry.api 2025-10-20 08:51:12,271 poetry.core.factory WARNING The "poetry.dev-dependencies" section is deprecated and will be removed in a future version. Use "poetry.group.dev.dependencies" instead. 2025-10-20 08:51:12,290 poetry.core.masonry.builders.wheel INFO Building wheel 2025-10-20 08:51:12,324 poetry.core.masonry.builders.wheel INFO Built kallisto-1.0.10-py3-none-any.whl 2025-10-20 08:51:12,324 gpep517 INFO The backend produced .dist/kallisto-1.0.10-py3-none-any.whl kallisto-1.0.10-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.12, pytest-8.4.2, pluggy-1.6.0 rootdir: /home/buildozer/aports/community/py3-kallisto/src/kallisto-1.0.10 configfile: pyproject.toml collected 95 items tests/test_alp.py ... [ 3%] tests/test_atom.py ...... [ 9%] tests/test_bonds.py ... [ 12%] tests/test_cli.py ........................................... [ 57%] tests/test_cns.py ... [ 61%] tests/test_eeq.py ... [ 64%] tests/test_exs.py .. [ 66%] tests/test_grid.py . [ 67%] tests/test_lig.py . [ 68%] tests/test_molecule.py ............ [ 81%] tests/test_prox.py .. [ 83%] tests/test_rms.py . [ 84%] tests/test_stm.py . [ 85%] tests/test_strucreader.py ..... [ 90%] tests/test_vdw.py ........ [ 98%] tests/test_version.py . [100%] ============================== 95 passed in 1.83s ============================== >>> py3-kallisto: Entering fakeroot... libfakeroot internal error: payload not recognized! >>> py3-kallisto-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/kallisto/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/data/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/data/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' >>> py3-kallisto-pyc*: Preparing subpackage py3-kallisto-pyc... >>> py3-kallisto-pyc*: Running postcheck for py3-kallisto-pyc >>> py3-kallisto*: Running postcheck for py3-kallisto >>> py3-kallisto*: Preparing package py3-kallisto... >>> py3-kallisto-pyc*: Tracing dependencies... python3~3.12 >>> py3-kallisto-pyc*: Package size: 510.9 KB >>> py3-kallisto-pyc*: Compressing data... >>> py3-kallisto-pyc*: Create checksum... >>> py3-kallisto-pyc*: Create py3-kallisto-pyc-1.0.10-r2.apk >>> py3-kallisto*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto*: Package size: 390.1 KB >>> py3-kallisto*: Compressing data... >>> py3-kallisto*: Create checksum... >>> py3-kallisto*: Create py3-kallisto-1.0.10-r2.apk >>> py3-kallisto: Build complete at Mon, 20 Oct 2025 08:51:16 +0000 elapsed time 0h 0m 45s >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Uninstalling dependencies... ( 1/66) Purging .makedepends-py3-kallisto (20251020.085109) ( 2/66) Purging py3-click-pyc (8.1.8-r1) ( 3/66) Purging py3-click (8.1.8-r1) ( 4/66) Purging py3-scipy-pyc (1.16.1-r1) ( 5/66) Purging py3-scipy (1.16.1-r1) ( 6/66) Purging py3-pooch-pyc (1.8.2-r1) ( 7/66) Purging py3-pooch (1.8.2-r1) ( 8/66) Purging py3-platformdirs-pyc (4.5.0-r0) ( 9/66) Purging py3-platformdirs (4.5.0-r0) (10/66) Purging py3-requests-pyc (2.32.5-r0) (11/66) Purging py3-requests (2.32.5-r0) (12/66) Purging py3-certifi-pyc (2025.10.5-r0) (13/66) Purging py3-certifi (2025.10.5-r0) (14/66) Purging py3-charset-normalizer-pyc (3.4.3-r0) (15/66) Purging py3-charset-normalizer (3.4.3-r0) (16/66) Purging py3-idna-pyc (3.10-r0) (17/66) Purging py3-idna (3.10-r0) (18/66) Purging py3-urllib3-pyc (1.26.20-r0) (19/66) Purging py3-urllib3 (1.26.20-r0) (20/66) Purging py3-numpy-tests (2.3.2-r0) (21/66) Purging py3-numpy-pyc (2.3.2-r0) (22/66) Purging py3-numpy (2.3.2-r0) (23/66) Purging openblas (0.3.30-r0) (24/66) Purging py3-poetry-core-pyc (2.1.3-r0) (25/66) Purging py3-poetry-core (2.1.3-r0) (26/66) Purging py3-fastjsonschema-pyc (2.21.2-r0) (27/66) Purging py3-fastjsonschema (2.21.2-r0) (28/66) Purging py3-lark-parser-pyc (1.2.2-r0) (29/66) Purging py3-lark-parser (1.2.2-r0) (30/66) Purging py3-gpep517-pyc (19-r0) (31/66) Purging py3-gpep517 (19-r0) (32/66) Purging py3-installer-pyc (0.7.0-r2) (33/66) Purging py3-installer (0.7.0-r2) (34/66) Purging py3-wheel-pyc (0.46.1-r0) (35/66) Purging py3-wheel (0.46.1-r0) (36/66) Purging py3-pytest-runner-pyc (6.0.1-r1) (37/66) Purging py3-pytest-runner (6.0.1-r1) (38/66) Purging py3-pytest-pyc (8.4.2-r1) (39/66) Purging py3-pytest (8.4.2-r1) (40/66) Purging py3-iniconfig-pyc (2.1.0-r0) (41/66) Purging py3-iniconfig (2.1.0-r0) (42/66) Purging py3-pluggy-pyc (1.6.0-r0) (43/66) Purging py3-pluggy (1.6.0-r0) (44/66) Purging py3-py-pyc (1.11.0-r4) (45/66) Purging py3-py (1.11.0-r4) (46/66) Purging py3-pygments-pyc (2.19.2-r0) (47/66) Purging py3-pygments (2.19.2-r0) (48/66) Purging py3-setuptools-pyc (80.9.0-r1) (49/66) Purging py3-setuptools (80.9.0-r1) (50/66) Purging py3-packaging-pyc (25.0-r0) (51/66) Purging py3-packaging (25.0-r0) (52/66) Purging py3-parsing-pyc (3.2.3-r0) (53/66) Purging py3-parsing (3.2.3-r0) (54/66) Purging python3-pyc (3.12.12-r0) (55/66) Purging python3-pycache-pyc0 (3.12.12-r0) (56/66) Purging pyc (3.12.12-r0) (57/66) Purging python3 (3.12.12-r0) (58/66) Purging gdbm (1.26-r0) (59/66) Purging libbz2 (1.0.8-r6) (60/66) Purging libffi (3.5.2-r0) (61/66) Purging libgfortran (15.2.0-r1) (62/66) Purging libpanelw (6.5_p20251010-r0) (63/66) Purging libquadmath (15.2.0-r1) (64/66) Purging mpdecimal (4.0.1-r0) (65/66) Purging sqlite-libs (3.50.4-r1) (66/66) Purging xz-libs (5.8.1-r0) busybox-1.37.0-r24.trigger: Executing script... OK: 426 MiB in 105 packages >>> py3-kallisto: Updating the community/x86 repository index... >>> py3-kallisto: Signing the index...