>>> py3-biopython: Building community/py3-biopython 1.85-r0 (using abuild 3.15.0_rc3-r1) started Thu, 24 Apr 2025 08:22:28 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> WARNING: py3-biopython: No maintainer
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
(1/30) Installing libquadmath (14.2.0-r5)
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(7/30) Installing libpanelw (6.5_p20250412-r0)
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(9/30) Installing python3 (3.12.10-r0)
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(12/30) Installing py3-numpy-pyc (2.2.4-r0)
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(14/30) Installing py3-numpy (2.2.4-r0)
(15/30) Installing py3-numpy-tests (2.2.4-r0)
(16/30) Installing py3-installer (0.7.0-r2)
(17/30) Installing py3-installer-pyc (0.7.0-r2)
(18/30) Installing py3-gpep517 (16-r0)
(19/30) Installing py3-gpep517-pyc (16-r0)
(20/30) Installing py3-parsing (3.2.0-r0)
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(22/30) Installing py3-packaging (24.2-r0)
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(24/30) Installing py3-setuptools (77.0.3-r0)
(25/30) Installing py3-setuptools-pyc (77.0.3-r0)
(26/30) Installing py3-wheel (0.43.0-r0)
(27/30) Installing py3-wheel-pyc (0.43.0-r0)
(28/30) Installing py3-numpy-dev (2.2.4-r0)
(29/30) Installing python3-dev (3.12.10-r0)
(30/30) Installing .makedepends-py3-biopython (20250424.082229)
Executing busybox-1.37.0-r16.trigger
OK: 544 MiB in 148 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.85.tar.gz
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
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curl: (22) The requested URL returned error: 404
>>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.85.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100 18.9M  100 18.9M    0     0  45.3M      0 --:--:-- --:--:-- --:--:-- 45.3M
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.85.tar.gz
>>> py3-biopython: Checking sha512sums...
biopython-1.85.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.85.tar.gz...
2025-04-24 08:22:32,764 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__
/usr/lib/python3.12/site-packages/setuptools/dist.py:760: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: Freely Distributable

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
2025-04-24 08:22:32,795 root INFO running bdist_wheel
2025-04-24 08:22:32,815 root INFO running build
2025-04-24 08:22:32,815 root INFO running build_py
2025-04-24 08:22:32,820 root INFO creating build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,820 root INFO copying Bio/Seq.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,821 root INFO copying Bio/SeqFeature.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,822 root INFO copying Bio/_utils.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,822 root INFO copying Bio/kNN.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,822 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,823 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,823 root INFO copying Bio/__init__.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,823 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,824 root INFO copying Bio/MarkovModel.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,824 root INFO copying Bio/File.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,825 root INFO copying Bio/SeqRecord.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,825 root INFO copying Bio/bgzf.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,826 root INFO copying Bio/pairwise2.py -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:32,826 root INFO creating build/lib.linux-i686-cpython-312/Bio/Affy
2025-04-24 08:22:32,826 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-i686-cpython-312/Bio/Affy
2025-04-24 08:22:32,827 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Affy
2025-04-24 08:22:32,827 root INFO creating build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,828 root INFO copying Bio/Align/clustal.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,828 root INFO copying Bio/Align/analysis.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,828 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,829 root INFO copying Bio/Align/mauve.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,829 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,830 root INFO copying Bio/Align/sam.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,830 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,830 root INFO copying Bio/Align/chain.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,831 root INFO copying Bio/Align/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,831 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,832 root INFO copying Bio/Align/phylip.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,832 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,833 root INFO copying Bio/Align/psl.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,833 root INFO copying Bio/Align/msf.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,833 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,834 root INFO copying Bio/Align/tabular.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,834 root INFO copying Bio/Align/fasta.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,834 root INFO copying Bio/Align/maf.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,835 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,835 root INFO copying Bio/Align/a2m.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,835 root INFO copying Bio/Align/nexus.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,836 root INFO copying Bio/Align/hhr.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,836 root INFO copying Bio/Align/emboss.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,836 root INFO copying Bio/Align/bed.py -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:32,837 root INFO creating build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,837 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,837 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,838 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,838 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,838 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,839 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,839 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,839 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,839 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,840 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-i686-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,840 root INFO creating build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices
2025-04-24 08:22:32,840 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices
2025-04-24 08:22:32,841 root INFO creating build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,841 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,841 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,842 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,842 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,842 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,843 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,843 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,843 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,844 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,844 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,844 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-i686-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,845 root INFO creating build/lib.linux-i686-cpython-312/Bio/Alphabet
2025-04-24 08:22:32,845 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Alphabet
2025-04-24 08:22:32,845 root INFO creating build/lib.linux-i686-cpython-312/Bio/Application
2025-04-24 08:22:32,845 root INFO copying Bio/Application/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Application
2025-04-24 08:22:32,846 root INFO creating build/lib.linux-i686-cpython-312/Bio/Blast
2025-04-24 08:22:32,846 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-i686-cpython-312/Bio/Blast
2025-04-24 08:22:32,846 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-i686-cpython-312/Bio/Blast
2025-04-24 08:22:32,847 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Blast
2025-04-24 08:22:32,847 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-i686-cpython-312/Bio/Blast
2025-04-24 08:22:32,848 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-i686-cpython-312/Bio/Blast
2025-04-24 08:22:32,848 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-i686-cpython-312/Bio/Blast
2025-04-24 08:22:32,848 root INFO creating build/lib.linux-i686-cpython-312/Bio/CAPS
2025-04-24 08:22:32,849 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-i686-cpython-312/Bio/CAPS
2025-04-24 08:22:32,849 root INFO creating build/lib.linux-i686-cpython-312/Bio/Cluster
2025-04-24 08:22:32,849 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Cluster
2025-04-24 08:22:32,850 root INFO creating build/lib.linux-i686-cpython-312/Bio/codonalign
2025-04-24 08:22:32,850 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-i686-cpython-312/Bio/codonalign
2025-04-24 08:22:32,851 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-i686-cpython-312/Bio/codonalign
2025-04-24 08:22:32,851 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-i686-cpython-312/Bio/codonalign
2025-04-24 08:22:32,851 root INFO creating build/lib.linux-i686-cpython-312/Bio/Compass
2025-04-24 08:22:32,852 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Compass
2025-04-24 08:22:32,852 root INFO creating build/lib.linux-i686-cpython-312/Bio/Data
2025-04-24 08:22:32,852 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-i686-cpython-312/Bio/Data
2025-04-24 08:22:32,853 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-i686-cpython-312/Bio/Data
2025-04-24 08:22:32,853 root INFO copying Bio/Data/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Data
2025-04-24 08:22:32,853 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-i686-cpython-312/Bio/Data
2025-04-24 08:22:32,854 root INFO creating build/lib.linux-i686-cpython-312/Bio/Emboss
2025-04-24 08:22:32,854 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-i686-cpython-312/Bio/Emboss
2025-04-24 08:22:32,854 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Emboss
2025-04-24 08:22:32,854 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-i686-cpython-312/Bio/Emboss
2025-04-24 08:22:32,855 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-i686-cpython-312/Bio/Emboss
2025-04-24 08:22:32,855 root INFO creating build/lib.linux-i686-cpython-312/Bio/Entrez
2025-04-24 08:22:32,855 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-i686-cpython-312/Bio/Entrez
2025-04-24 08:22:32,856 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Entrez
2025-04-24 08:22:32,856 root INFO creating build/lib.linux-i686-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,856 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-i686-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,857 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-i686-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,857 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-i686-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,858 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-i686-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,858 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-i686-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,858 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-i686-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,859 root INFO creating build/lib.linux-i686-cpython-312/Bio/GenBank
2025-04-24 08:22:32,859 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-i686-cpython-312/Bio/GenBank
2025-04-24 08:22:32,859 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-i686-cpython-312/Bio/GenBank
2025-04-24 08:22:32,860 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-i686-cpython-312/Bio/GenBank
2025-04-24 08:22:32,860 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-i686-cpython-312/Bio/GenBank
2025-04-24 08:22:32,860 root INFO creating build/lib.linux-i686-cpython-312/Bio/Geo
2025-04-24 08:22:32,861 root INFO copying Bio/Geo/Record.py -> build/lib.linux-i686-cpython-312/Bio/Geo
2025-04-24 08:22:32,861 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Geo
2025-04-24 08:22:32,861 root INFO creating build/lib.linux-i686-cpython-312/Bio/Graphics
2025-04-24 08:22:32,861 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-i686-cpython-312/Bio/Graphics
2025-04-24 08:22:32,862 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-i686-cpython-312/Bio/Graphics
2025-04-24 08:22:32,862 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-i686-cpython-312/Bio/Graphics
2025-04-24 08:22:32,862 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Graphics
2025-04-24 08:22:32,863 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-i686-cpython-312/Bio/Graphics
2025-04-24 08:22:32,863 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-i686-cpython-312/Bio/Graphics
2025-04-24 08:22:32,863 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-i686-cpython-312/Bio/Graphics
2025-04-24 08:22:32,864 root INFO creating build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,864 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,864 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,865 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,865 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,866 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,866 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,866 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,867 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,867 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,867 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,868 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,868 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,868 root INFO creating build/lib.linux-i686-cpython-312/Bio/HMM
2025-04-24 08:22:32,869 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-i686-cpython-312/Bio/HMM
2025-04-24 08:22:32,869 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-i686-cpython-312/Bio/HMM
2025-04-24 08:22:32,869 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-i686-cpython-312/Bio/HMM
2025-04-24 08:22:32,870 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-i686-cpython-312/Bio/HMM
2025-04-24 08:22:32,870 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-i686-cpython-312/Bio/HMM
2025-04-24 08:22:32,871 root INFO creating build/lib.linux-i686-cpython-312/Bio/KEGG
2025-04-24 08:22:32,871 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-i686-cpython-312/Bio/KEGG
2025-04-24 08:22:32,871 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-i686-cpython-312/Bio/KEGG
2025-04-24 08:22:32,871 root INFO creating build/lib.linux-i686-cpython-312/Bio/KEGG/Compound
2025-04-24 08:22:32,872 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-i686-cpython-312/Bio/KEGG/Compound
2025-04-24 08:22:32,872 root INFO creating build/lib.linux-i686-cpython-312/Bio/KEGG/Enzyme
2025-04-24 08:22:32,872 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-i686-cpython-312/Bio/KEGG/Enzyme
2025-04-24 08:22:32,873 root INFO creating build/lib.linux-i686-cpython-312/Bio/KEGG/Gene
2025-04-24 08:22:32,873 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-i686-cpython-312/Bio/KEGG/Gene
2025-04-24 08:22:32,873 root INFO creating build/lib.linux-i686-cpython-312/Bio/KEGG/Map
2025-04-24 08:22:32,874 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-i686-cpython-312/Bio/KEGG/Map
2025-04-24 08:22:32,874 root INFO creating build/lib.linux-i686-cpython-312/Bio/PDB/mmtf
2025-04-24 08:22:32,874 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-i686-cpython-312/Bio/PDB/mmtf
2025-04-24 08:22:32,875 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-i686-cpython-312/Bio/PDB/mmtf
2025-04-24 08:22:32,875 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-i686-cpython-312/Bio/PDB/mmtf
2025-04-24 08:22:32,875 root INFO creating build/lib.linux-i686-cpython-312/Bio/KEGG/KGML
2025-04-24 08:22:32,875 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-i686-cpython-312/Bio/KEGG/KGML
2025-04-24 08:22:32,876 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-i686-cpython-312/Bio/KEGG/KGML
2025-04-24 08:22:32,876 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-i686-cpython-312/Bio/KEGG/KGML
2025-04-24 08:22:32,877 root INFO creating build/lib.linux-i686-cpython-312/Bio/Medline
2025-04-24 08:22:32,877 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Medline
2025-04-24 08:22:32,877 root INFO creating build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,877 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,878 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,878 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,878 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,879 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,879 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,879 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,880 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,880 root INFO copying Bio/motifs/xms.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,880 root INFO copying Bio/motifs/mast.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,881 root INFO copying Bio/motifs/meme.py -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:32,881 root INFO creating build/lib.linux-i686-cpython-312/Bio/motifs/applications
2025-04-24 08:22:32,881 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-i686-cpython-312/Bio/motifs/applications
2025-04-24 08:22:32,882 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-i686-cpython-312/Bio/motifs/applications
2025-04-24 08:22:32,882 root INFO creating build/lib.linux-i686-cpython-312/Bio/motifs/jaspar
2025-04-24 08:22:32,882 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-i686-cpython-312/Bio/motifs/jaspar
2025-04-24 08:22:32,883 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-i686-cpython-312/Bio/motifs/jaspar
2025-04-24 08:22:32,883 root INFO creating build/lib.linux-i686-cpython-312/Bio/Nexus
2025-04-24 08:22:32,883 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-i686-cpython-312/Bio/Nexus
2025-04-24 08:22:32,884 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Nexus
2025-04-24 08:22:32,884 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-i686-cpython-312/Bio/Nexus
2025-04-24 08:22:32,884 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-i686-cpython-312/Bio/Nexus
2025-04-24 08:22:32,885 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-i686-cpython-312/Bio/Nexus
2025-04-24 08:22:32,885 root INFO creating build/lib.linux-i686-cpython-312/Bio/NMR
2025-04-24 08:22:32,885 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-i686-cpython-312/Bio/NMR
2025-04-24 08:22:32,886 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-i686-cpython-312/Bio/NMR
2025-04-24 08:22:32,886 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-i686-cpython-312/Bio/NMR
2025-04-24 08:22:32,886 root INFO creating build/lib.linux-i686-cpython-312/Bio/Pathway
2025-04-24 08:22:32,887 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Pathway
2025-04-24 08:22:32,887 root INFO creating build/lib.linux-i686-cpython-312/Bio/Pathway/Rep
2025-04-24 08:22:32,887 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Pathway/Rep
2025-04-24 08:22:32,888 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-i686-cpython-312/Bio/Pathway/Rep
2025-04-24 08:22:32,888 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-i686-cpython-312/Bio/Pathway/Rep
2025-04-24 08:22:32,889 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,889 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,889 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,890 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,890 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,890 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,891 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,891 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,891 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,892 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,892 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,892 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,893 root INFO copying Bio/PDB/Model.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,893 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,893 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,894 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,894 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,894 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,894 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,895 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,895 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,895 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,896 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,896 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,896 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,897 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,897 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,897 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,898 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,898 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,898 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,899 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,899 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,899 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,900 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,900 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,900 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,901 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,901 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,901 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,902 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:32,902 root INFO creating build/lib.linux-i686-cpython-312/Bio/phenotype
2025-04-24 08:22:32,902 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-i686-cpython-312/Bio/phenotype
2025-04-24 08:22:32,903 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-i686-cpython-312/Bio/phenotype
2025-04-24 08:22:32,903 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-i686-cpython-312/Bio/phenotype
2025-04-24 08:22:32,904 root INFO creating build/lib.linux-i686-cpython-312/Bio/PopGen
2025-04-24 08:22:32,904 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-i686-cpython-312/Bio/PopGen
2025-04-24 08:22:32,904 root INFO creating build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,904 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,905 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,905 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,905 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,906 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,906 root INFO creating build/lib.linux-i686-cpython-312/Bio/Restriction
2025-04-24 08:22:32,906 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Restriction
2025-04-24 08:22:32,907 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-i686-cpython-312/Bio/Restriction
2025-04-24 08:22:32,907 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-i686-cpython-312/Bio/Restriction
2025-04-24 08:22:32,908 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-i686-cpython-312/Bio/Restriction
2025-04-24 08:22:32,909 root INFO creating build/lib.linux-i686-cpython-312/Bio/SCOP
2025-04-24 08:22:32,909 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-i686-cpython-312/Bio/SCOP
2025-04-24 08:22:32,909 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-i686-cpython-312/Bio/SCOP
2025-04-24 08:22:32,910 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-i686-cpython-312/Bio/SCOP
2025-04-24 08:22:32,910 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-i686-cpython-312/Bio/SCOP
2025-04-24 08:22:32,910 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SCOP
2025-04-24 08:22:32,911 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-i686-cpython-312/Bio/SCOP
2025-04-24 08:22:32,911 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-i686-cpython-312/Bio/SCOP
2025-04-24 08:22:32,911 root INFO creating build/lib.linux-i686-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,912 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,912 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,912 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,913 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,913 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,914 root INFO creating build/lib.linux-i686-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,914 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,914 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,914 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,915 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,915 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,915 root INFO creating build/lib.linux-i686-cpython-312/Bio/SearchIO/BlastIO
2025-04-24 08:22:32,916 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/BlastIO
2025-04-24 08:22:32,916 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/BlastIO
2025-04-24 08:22:32,916 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/BlastIO
2025-04-24 08:22:32,917 root INFO creating build/lib.linux-i686-cpython-312/Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:32,917 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:32,917 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:32,918 root INFO creating build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,918 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,918 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,919 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,919 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,919 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,920 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,920 root INFO creating build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,920 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,921 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,921 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,921 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,922 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,922 root INFO creating build/lib.linux-i686-cpython-312/Bio/SearchIO/InterproscanIO
2025-04-24 08:22:32,922 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/InterproscanIO
2025-04-24 08:22:32,923 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SearchIO/InterproscanIO
2025-04-24 08:22:32,923 root INFO creating build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,923 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,924 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,924 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,924 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,925 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,925 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,925 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,926 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,926 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,926 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,927 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,927 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,927 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,928 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,928 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,928 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,929 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,929 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,929 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,930 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,930 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,931 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,931 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,931 root INFO creating build/lib.linux-i686-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,932 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-i686-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,932 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-i686-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,932 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,933 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-i686-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,933 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-i686-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,933 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-i686-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,934 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-i686-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,934 root INFO creating build/lib.linux-i686-cpython-312/Bio/Sequencing
2025-04-24 08:22:32,934 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-i686-cpython-312/Bio/Sequencing
2025-04-24 08:22:32,934 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Sequencing
2025-04-24 08:22:32,935 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-i686-cpython-312/Bio/Sequencing
2025-04-24 08:22:32,935 root INFO creating build/lib.linux-i686-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,935 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,936 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-i686-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,936 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-i686-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,936 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-i686-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,937 root INFO creating build/lib.linux-i686-cpython-312/Bio/SVDSuperimposer
2025-04-24 08:22:32,937 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SVDSuperimposer
2025-04-24 08:22:32,937 root INFO creating build/lib.linux-i686-cpython-312/Bio/SwissProt
2025-04-24 08:22:32,938 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-i686-cpython-312/Bio/SwissProt
2025-04-24 08:22:32,938 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-i686-cpython-312/Bio/SwissProt
2025-04-24 08:22:32,938 root INFO creating build/lib.linux-i686-cpython-312/Bio/TogoWS
2025-04-24 08:22:32,938 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-i686-cpython-312/Bio/TogoWS
2025-04-24 08:22:32,939 root INFO creating build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,939 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,940 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,940 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,940 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,941 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,941 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,941 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,942 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,942 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,942 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,943 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,943 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,943 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,944 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,944 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,944 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-i686-cpython-312/Bio/Phylo
2025-04-24 08:22:32,945 root INFO creating build/lib.linux-i686-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,945 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,945 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,945 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,946 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,946 root INFO creating build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,946 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,947 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,947 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,947 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,948 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,948 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,948 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,949 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,949 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-i686-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,949 root INFO creating build/lib.linux-i686-cpython-312/Bio/UniGene
2025-04-24 08:22:32,950 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-i686-cpython-312/Bio/UniGene
2025-04-24 08:22:32,950 root INFO creating build/lib.linux-i686-cpython-312/Bio/UniProt
2025-04-24 08:22:32,950 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-i686-cpython-312/Bio/UniProt
2025-04-24 08:22:32,950 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-i686-cpython-312/Bio/UniProt
2025-04-24 08:22:32,951 root INFO creating build/lib.linux-i686-cpython-312/BioSQL
2025-04-24 08:22:32,951 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-i686-cpython-312/BioSQL
2025-04-24 08:22:32,951 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-i686-cpython-312/BioSQL
2025-04-24 08:22:32,952 root INFO copying BioSQL/__init__.py -> build/lib.linux-i686-cpython-312/BioSQL
2025-04-24 08:22:32,952 root INFO copying BioSQL/Loader.py -> build/lib.linux-i686-cpython-312/BioSQL
2025-04-24 08:22:32,952 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-i686-cpython-312/BioSQL
2025-04-24 08:22:32,953 root INFO running egg_info
2025-04-24 08:22:32,957 root INFO writing biopython.egg-info/PKG-INFO
2025-04-24 08:22:32,957 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2025-04-24 08:22:32,958 root INFO writing requirements to biopython.egg-info/requires.txt
2025-04-24 08:22:32,958 root INFO writing top-level names to biopython.egg-info/top_level.txt
2025-04-24 08:22:32,980 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2025-04-24 08:22:33,040 root INFO reading manifest template 'MANIFEST.in'
2025-04-24 08:22:33,139 root WARNING warning: no previously-included files found matching 'Doc/_build'
2025-04-24 08:22:33,146 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2025-04-24 08:22:33,149 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-04-24 08:22:33,153 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-04-24 08:22:33,156 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2025-04-24 08:22:33,160 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2025-04-24 08:22:33,168 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2025-04-24 08:22:33,168 root INFO adding license file 'LICENSE'
2025-04-24 08:22:33,168 root INFO adding license file 'LICENSE.rst'
2025-04-24 08:22:33,212 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.DTDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.DTDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.DTDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.XSDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.XSDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.XSDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
2025-04-24 08:22:33,252 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:33,252 root INFO copying Bio/py.typed -> build/lib.linux-i686-cpython-312/Bio
2025-04-24 08:22:33,253 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:33,253 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:33,253 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:33,254 root INFO creating build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,254 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,254 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,255 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,255 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,255 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,256 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,256 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,256 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,257 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,257 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,257 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,257 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,258 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,258 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,258 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,259 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,259 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,259 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,260 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,260 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,260 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,261 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,261 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,261 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,262 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,262 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,262 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,262 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,263 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,263 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:33,263 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-i686-cpython-312/Bio/Cluster
2025-04-24 08:22:33,264 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-i686-cpython-312/Bio/Cluster
2025-04-24 08:22:33,264 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-i686-cpython-312/Bio/Cluster
2025-04-24 08:22:33,265 root INFO creating build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:33,265 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:33,265 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:33,266 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs
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2025-04-24 08:22:33,360 root INFO creating build/lib.linux-i686-cpython-312/Bio/Entrez/XSDs
2025-04-24 08:22:33,360 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-i686-cpython-312/Bio/Entrez/XSDs
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2025-04-24 08:22:33,361 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-i686-cpython-312/Bio/Entrez/XSDs
2025-04-24 08:22:33,361 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:33,361 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-i686-cpython-312/Bio/Nexus
2025-04-24 08:22:33,362 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:33,362 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:33,362 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:33,363 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:33,363 root INFO copying BioSQL/py.typed -> build/lib.linux-i686-cpython-312/BioSQL
2025-04-24 08:22:33,372 root INFO running build_ext
2025-04-24 08:22:33,374 root INFO building 'Bio.Align._codonaligner' extension
2025-04-24 08:22:33,375 root INFO creating build/temp.linux-i686-cpython-312/Bio/Align
2025-04-24 08:22:33,375 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-i686-cpython-312/Bio/Align/_codonaligner.o
2025-04-24 08:22:33,990 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/Align/_codonaligner.cpython-312-i386-linux-musl.so
2025-04-24 08:22:34,007 root INFO building 'Bio.Align._pairwisealigner' extension
2025-04-24 08:22:34,007 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-i686-cpython-312/Bio/Align/_pairwisealigner.o
2025-04-24 08:22:41,532 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/Align/_pairwisealigner.cpython-312-i386-linux-musl.so
2025-04-24 08:22:41,547 root INFO building 'Bio.Align._aligncore' extension
2025-04-24 08:22:41,547 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-i686-cpython-312/Bio/Align/_aligncore.o
2025-04-24 08:22:41,841 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/Align/_aligncore.cpython-312-i386-linux-musl.so
2025-04-24 08:22:41,858 root INFO building 'Bio.cpairwise2' extension
2025-04-24 08:22:41,859 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-i686-cpython-312/Bio/cpairwise2module.o
2025-04-24 08:22:42,215 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/cpairwise2.cpython-312-i386-linux-musl.so
2025-04-24 08:22:42,229 root INFO building 'Bio.Nexus.cnexus' extension
2025-04-24 08:22:42,230 root INFO creating build/temp.linux-i686-cpython-312/Bio/Nexus
2025-04-24 08:22:42,230 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-i686-cpython-312/Bio/Nexus/cnexus.o
2025-04-24 08:22:42,413 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/Nexus/cnexus.cpython-312-i386-linux-musl.so
2025-04-24 08:22:42,427 root INFO building 'Bio.motifs._pwm' extension
2025-04-24 08:22:42,427 root INFO creating build/temp.linux-i686-cpython-312/Bio/motifs
2025-04-24 08:22:42,428 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-i686-cpython-312/Bio/motifs/_pwm.o
2025-04-24 08:22:42,613 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/motifs/_pwm.cpython-312-i386-linux-musl.so
2025-04-24 08:22:42,631 root INFO building 'Bio.Cluster._cluster' extension
2025-04-24 08:22:42,632 root INFO creating build/temp.linux-i686-cpython-312/Bio/Cluster
2025-04-24 08:22:42,633 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-i686-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2025-04-24 08:22:45,042 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-i686-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2025-04-24 08:22:45,867 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/Cluster/cluster.o build/temp.linux-i686-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/Cluster/_cluster.cpython-312-i386-linux-musl.so
2025-04-24 08:22:45,882 root INFO building 'Bio.PDB.ccealign' extension
2025-04-24 08:22:45,883 root INFO creating build/temp.linux-i686-cpython-312/Bio/PDB
2025-04-24 08:22:45,883 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-i686-cpython-312/Bio/PDB/ccealignmodule.o
2025-04-24 08:22:46,265 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/PDB/ccealign.cpython-312-i386-linux-musl.so
2025-04-24 08:22:46,281 root INFO building 'Bio.PDB.kdtrees' extension
2025-04-24 08:22:46,281 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-i686-cpython-312/Bio/PDB/kdtrees.o
2025-04-24 08:22:46,802 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/PDB/kdtrees.cpython-312-i386-linux-musl.so
2025-04-24 08:22:46,819 root INFO building 'Bio.PDB._bcif_helper' extension
2025-04-24 08:22:46,820 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-i686-cpython-312/Bio/PDB/bcifhelpermodule.o
2025-04-24 08:22:47,030 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/PDB/_bcif_helper.cpython-312-i386-linux-musl.so
2025-04-24 08:22:47,044 root INFO building 'Bio.SeqIO._twoBitIO' extension
2025-04-24 08:22:47,044 root INFO creating build/temp.linux-i686-cpython-312/Bio/SeqIO
2025-04-24 08:22:47,044 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-i686-cpython-312/Bio/SeqIO/_twoBitIO.o
2025-04-24 08:22:47,288 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-i686-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-i386-linux-musl.so
2025-04-24 08:22:47,310 root INFO installing to build/bdist.linux-i686/wheel
2025-04-24 08:22:47,310 root INFO running install
2025-04-24 08:22:47,323 root INFO running install_lib
2025-04-24 08:22:47,327 root INFO creating build/bdist.linux-i686/wheel
2025-04-24 08:22:47,328 root INFO creating build/bdist.linux-i686/wheel/Bio
2025-04-24 08:22:47,328 root INFO copying build/lib.linux-i686-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,328 root INFO creating build/bdist.linux-i686/wheel/Bio/Geo
2025-04-24 08:22:47,329 root INFO copying build/lib.linux-i686-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-i686/wheel/./Bio/Geo
2025-04-24 08:22:47,329 root INFO copying build/lib.linux-i686-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Geo
2025-04-24 08:22:47,329 root INFO creating build/bdist.linux-i686/wheel/Bio/Align
2025-04-24 08:22:47,329 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,330 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,330 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,330 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,331 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,331 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,331 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/sam.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,331 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,332 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/chain.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,332 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,332 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/_codonaligner.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,333 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,333 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,333 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,334 root INFO creating build/bdist.linux-i686/wheel/Bio/Align/Applications
2025-04-24 08:22:47,334 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,334 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,335 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,335 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,335 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,335 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,336 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,336 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,336 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,336 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-i686/wheel/./Bio/Align/Applications
2025-04-24 08:22:47,337 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,337 root INFO creating build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices
2025-04-24 08:22:47,337 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices
2025-04-24 08:22:47,338 root INFO creating build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,338 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,338 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,338 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,339 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,339 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,339 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,339 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,340 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,340 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,340 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,340 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,341 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,341 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,341 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,341 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,342 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,342 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,342 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,342 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,343 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,343 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,343 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,343 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,344 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,344 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,344 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,344 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,345 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,345 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,345 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-i686/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:47,345 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/psl.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,346 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/msf.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,346 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,346 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,346 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,347 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/maf.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,347 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/_pairwisealigner.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,347 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,348 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,348 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,348 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,348 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/_aligncore.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,349 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,349 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/bed.py -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,349 root INFO copying build/lib.linux-i686-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-i686/wheel/./Bio/Align
2025-04-24 08:22:47,350 root INFO creating build/bdist.linux-i686/wheel/Bio/codonalign
2025-04-24 08:22:47,350 root INFO copying build/lib.linux-i686-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-i686/wheel/./Bio/codonalign
2025-04-24 08:22:47,350 root INFO copying build/lib.linux-i686-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-i686/wheel/./Bio/codonalign
2025-04-24 08:22:47,350 root INFO copying build/lib.linux-i686-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-i686/wheel/./Bio/codonalign
2025-04-24 08:22:47,351 root INFO creating build/bdist.linux-i686/wheel/Bio/Phylo
2025-04-24 08:22:47,351 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,351 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,352 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,352 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,352 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,352 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,353 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,353 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,353 root INFO creating build/bdist.linux-i686/wheel/Bio/Phylo/Applications
2025-04-24 08:22:47,354 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/Applications
2025-04-24 08:22:47,354 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/Applications
2025-04-24 08:22:47,354 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/Applications
2025-04-24 08:22:47,354 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/Applications
2025-04-24 08:22:47,355 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,355 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,355 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,355 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,356 root INFO creating build/bdist.linux-i686/wheel/Bio/Phylo/PAML
2025-04-24 08:22:47,356 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:47,356 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:47,357 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:47,357 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:47,357 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:47,357 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:47,358 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:47,358 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:47,358 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-i686/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:47,358 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,359 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,359 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,359 root INFO copying build/lib.linux-i686-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-i686/wheel/./Bio/Phylo
2025-04-24 08:22:47,359 root INFO copying build/lib.linux-i686-cpython-312/Bio/Seq.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,360 root INFO creating build/bdist.linux-i686/wheel/Bio/ExPASy
2025-04-24 08:22:47,360 root INFO copying build/lib.linux-i686-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-i686/wheel/./Bio/ExPASy
2025-04-24 08:22:47,360 root INFO copying build/lib.linux-i686-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-i686/wheel/./Bio/ExPASy
2025-04-24 08:22:47,361 root INFO copying build/lib.linux-i686-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-i686/wheel/./Bio/ExPASy
2025-04-24 08:22:47,361 root INFO copying build/lib.linux-i686-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-i686/wheel/./Bio/ExPASy
2025-04-24 08:22:47,361 root INFO copying build/lib.linux-i686-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-i686/wheel/./Bio/ExPASy
2025-04-24 08:22:47,361 root INFO copying build/lib.linux-i686-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-i686/wheel/./Bio/ExPASy
2025-04-24 08:22:47,362 root INFO creating build/bdist.linux-i686/wheel/Bio/Medline
2025-04-24 08:22:47,362 root INFO copying build/lib.linux-i686-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Medline
2025-04-24 08:22:47,362 root INFO creating build/bdist.linux-i686/wheel/Bio/Application
2025-04-24 08:22:47,362 root INFO copying build/lib.linux-i686-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Application
2025-04-24 08:22:47,363 root INFO creating build/bdist.linux-i686/wheel/Bio/SwissProt
2025-04-24 08:22:47,363 root INFO copying build/lib.linux-i686-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-i686/wheel/./Bio/SwissProt
2025-04-24 08:22:47,363 root INFO copying build/lib.linux-i686-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SwissProt
2025-04-24 08:22:47,364 root INFO creating build/bdist.linux-i686/wheel/Bio/PopGen
2025-04-24 08:22:47,364 root INFO copying build/lib.linux-i686-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-i686/wheel/./Bio/PopGen
2025-04-24 08:22:47,364 root INFO creating build/bdist.linux-i686/wheel/Bio/PopGen/GenePop
2025-04-24 08:22:47,364 root INFO copying build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-i686/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:47,365 root INFO copying build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-i686/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:47,365 root INFO copying build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-i686/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:47,365 root INFO copying build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-i686/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:47,365 root INFO copying build/lib.linux-i686-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-i686/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:47,366 root INFO creating build/bdist.linux-i686/wheel/Bio/HMM
2025-04-24 08:22:47,366 root INFO copying build/lib.linux-i686-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-i686/wheel/./Bio/HMM
2025-04-24 08:22:47,366 root INFO copying build/lib.linux-i686-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-i686/wheel/./Bio/HMM
2025-04-24 08:22:47,367 root INFO copying build/lib.linux-i686-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-i686/wheel/./Bio/HMM
2025-04-24 08:22:47,367 root INFO copying build/lib.linux-i686-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-i686/wheel/./Bio/HMM
2025-04-24 08:22:47,367 root INFO copying build/lib.linux-i686-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-i686/wheel/./Bio/HMM
2025-04-24 08:22:47,367 root INFO creating build/bdist.linux-i686/wheel/Bio/Restriction
2025-04-24 08:22:47,368 root INFO copying build/lib.linux-i686-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Restriction
2025-04-24 08:22:47,368 root INFO copying build/lib.linux-i686-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-i686/wheel/./Bio/Restriction
2025-04-24 08:22:47,368 root INFO copying build/lib.linux-i686-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-i686/wheel/./Bio/Restriction
2025-04-24 08:22:47,368 root INFO copying build/lib.linux-i686-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-i686/wheel/./Bio/Restriction
2025-04-24 08:22:47,369 root INFO creating build/bdist.linux-i686/wheel/Bio/Entrez
2025-04-24 08:22:47,370 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-i686/wheel/./Bio/Entrez
2025-04-24 08:22:47,370 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Entrez
2025-04-24 08:22:47,371 root INFO creating build/bdist.linux-i686/wheel/Bio/Entrez/XSDs
2025-04-24 08:22:47,371 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-i686/wheel/./Bio/Entrez/XSDs
2025-04-24 08:22:47,371 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-i686/wheel/./Bio/Entrez/XSDs
2025-04-24 08:22:47,372 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-i686/wheel/./Bio/Entrez/XSDs
2025-04-24 08:22:47,372 root INFO creating build/bdist.linux-i686/wheel/Bio/Entrez/DTDs
2025-04-24 08:22:47,372 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,373 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,373 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,373 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,373 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,374 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,374 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,374 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,374 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,375 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,375 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,375 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,375 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,376 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,376 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,376 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,376 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,377 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,377 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,377 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,377 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,378 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,378 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,378 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,378 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,379 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,379 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,379 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,379 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,380 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,380 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,380 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,381 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,381 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,381 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,381 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,382 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,382 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,382 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,382 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,383 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,383 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,383 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,384 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,384 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,384 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,384 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,385 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,385 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,385 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,385 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,386 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,386 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,386 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,386 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,387 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,387 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,387 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,388 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,388 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,388 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,388 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,389 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,389 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,389 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,390 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,390 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,390 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,390 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,391 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,391 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,391 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,391 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,392 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,392 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,392 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,392 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,393 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,393 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,393 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,394 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,394 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,394 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,394 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,395 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,395 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,395 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,395 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,396 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,396 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,396 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,396 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,397 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,397 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,397 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,397 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,398 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,398 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,398 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,398 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,399 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,399 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,399 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,400 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,400 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,400 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,401 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,401 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,401 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,401 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,402 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,402 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,402 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,402 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,403 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,403 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,403 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,404 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,404 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,404 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,404 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,405 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,405 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,405 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,405 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,406 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,406 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,406 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,407 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,407 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,407 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,407 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,408 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,408 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,408 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,408 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,409 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,409 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,410 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,410 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,410 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,411 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,411 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,411 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,411 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,412 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,412 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,412 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,412 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,413 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,413 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,413 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,414 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,414 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,414 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,415 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,415 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,416 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,416 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,416 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,417 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,417 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,417 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,417 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,418 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,418 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,418 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,419 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,419 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,419 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,419 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,420 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,421 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,422 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,423 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,423 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,423 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,424 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,424 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,425 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,425 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,425 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,425 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,427 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,427 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,428 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,428 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,432 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,433 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,433 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,434 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,436 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,436 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,439 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,440 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,440 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,443 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,444 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:47,446 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,447 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,447 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,447 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,447 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,448 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,448 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,448 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,449 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,449 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,449 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,449 root INFO copying build/lib.linux-i686-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-i686/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:47,450 root INFO creating build/bdist.linux-i686/wheel/Bio/TogoWS
2025-04-24 08:22:47,450 root INFO copying build/lib.linux-i686-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-i686/wheel/./Bio/TogoWS
2025-04-24 08:22:47,450 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,451 root INFO copying build/lib.linux-i686-cpython-312/Bio/_utils.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,451 root INFO creating build/bdist.linux-i686/wheel/Bio/UniGene
2025-04-24 08:22:47,451 root INFO copying build/lib.linux-i686-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-i686/wheel/./Bio/UniGene
2025-04-24 08:22:47,451 root INFO copying build/lib.linux-i686-cpython-312/Bio/cpairwise2.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,452 root INFO creating build/bdist.linux-i686/wheel/Bio/Sequencing
2025-04-24 08:22:47,452 root INFO copying build/lib.linux-i686-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-i686/wheel/./Bio/Sequencing
2025-04-24 08:22:47,452 root INFO copying build/lib.linux-i686-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Sequencing
2025-04-24 08:22:47,453 root INFO copying build/lib.linux-i686-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-i686/wheel/./Bio/Sequencing
2025-04-24 08:22:47,453 root INFO creating build/bdist.linux-i686/wheel/Bio/Sequencing/Applications
2025-04-24 08:22:47,453 root INFO copying build/lib.linux-i686-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Sequencing/Applications
2025-04-24 08:22:47,453 root INFO copying build/lib.linux-i686-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-i686/wheel/./Bio/Sequencing/Applications
2025-04-24 08:22:47,454 root INFO copying build/lib.linux-i686-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-i686/wheel/./Bio/Sequencing/Applications
2025-04-24 08:22:47,454 root INFO copying build/lib.linux-i686-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-i686/wheel/./Bio/Sequencing/Applications
2025-04-24 08:22:47,454 root INFO copying build/lib.linux-i686-cpython-312/Bio/kNN.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,455 root INFO creating build/bdist.linux-i686/wheel/Bio/SeqIO
2025-04-24 08:22:47,455 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,455 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,455 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,456 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,456 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,456 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,456 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,457 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,457 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,457 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,458 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,458 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,458 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,458 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,459 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,459 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,459 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,459 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,460 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,460 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,460 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,461 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,461 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,461 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,461 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-i686/wheel/./Bio/SeqIO
2025-04-24 08:22:47,462 root INFO copying build/lib.linux-i686-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,462 root INFO creating build/bdist.linux-i686/wheel/Bio/Cluster
2025-04-24 08:22:47,462 root INFO copying build/lib.linux-i686-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-i686/wheel/./Bio/Cluster
2025-04-24 08:22:47,463 root INFO copying build/lib.linux-i686-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-i686/wheel/./Bio/Cluster
2025-04-24 08:22:47,463 root INFO copying build/lib.linux-i686-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-i686/wheel/./Bio/Cluster
2025-04-24 08:22:47,463 root INFO copying build/lib.linux-i686-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Cluster
2025-04-24 08:22:47,464 root INFO copying build/lib.linux-i686-cpython-312/Bio/Cluster/_cluster.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/Cluster
2025-04-24 08:22:47,464 root INFO creating build/bdist.linux-i686/wheel/Bio/UniProt
2025-04-24 08:22:47,464 root INFO copying build/lib.linux-i686-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-i686/wheel/./Bio/UniProt
2025-04-24 08:22:47,464 root INFO copying build/lib.linux-i686-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-i686/wheel/./Bio/UniProt
2025-04-24 08:22:47,465 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG
2025-04-24 08:22:47,465 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/Enzyme
2025-04-24 08:22:47,465 root INFO copying build/lib.linux-i686-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-i686/wheel/./Bio/KEGG/Enzyme
2025-04-24 08:22:47,466 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/Gene
2025-04-24 08:22:47,466 root INFO copying build/lib.linux-i686-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-i686/wheel/./Bio/KEGG/Gene
2025-04-24 08:22:47,466 root INFO copying build/lib.linux-i686-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-i686/wheel/./Bio/KEGG
2025-04-24 08:22:47,466 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/KGML
2025-04-24 08:22:47,467 root INFO copying build/lib.linux-i686-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-i686/wheel/./Bio/KEGG/KGML
2025-04-24 08:22:47,467 root INFO copying build/lib.linux-i686-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-i686/wheel/./Bio/KEGG/KGML
2025-04-24 08:22:47,467 root INFO copying build/lib.linux-i686-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-i686/wheel/./Bio/KEGG/KGML
2025-04-24 08:22:47,468 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/Map
2025-04-24 08:22:47,468 root INFO copying build/lib.linux-i686-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-i686/wheel/./Bio/KEGG/Map
2025-04-24 08:22:47,468 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/Compound
2025-04-24 08:22:47,468 root INFO copying build/lib.linux-i686-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-i686/wheel/./Bio/KEGG/Compound
2025-04-24 08:22:47,469 root INFO copying build/lib.linux-i686-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-i686/wheel/./Bio/KEGG
2025-04-24 08:22:47,469 root INFO copying build/lib.linux-i686-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,469 root INFO copying build/lib.linux-i686-cpython-312/Bio/__init__.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,469 root INFO creating build/bdist.linux-i686/wheel/Bio/phenotype
2025-04-24 08:22:47,470 root INFO copying build/lib.linux-i686-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-i686/wheel/./Bio/phenotype
2025-04-24 08:22:47,470 root INFO copying build/lib.linux-i686-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-i686/wheel/./Bio/phenotype
2025-04-24 08:22:47,470 root INFO copying build/lib.linux-i686-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-i686/wheel/./Bio/phenotype
2025-04-24 08:22:47,471 root INFO copying build/lib.linux-i686-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,471 root INFO creating build/bdist.linux-i686/wheel/Bio/Graphics
2025-04-24 08:22:47,471 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-i686/wheel/./Bio/Graphics
2025-04-24 08:22:47,471 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-i686/wheel/./Bio/Graphics
2025-04-24 08:22:47,472 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-i686/wheel/./Bio/Graphics
2025-04-24 08:22:47,472 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Graphics
2025-04-24 08:22:47,472 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-i686/wheel/./Bio/Graphics
2025-04-24 08:22:47,473 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-i686/wheel/./Bio/Graphics
2025-04-24 08:22:47,473 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-i686/wheel/./Bio/Graphics
2025-04-24 08:22:47,473 root INFO creating build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,473 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,474 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,474 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,474 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,474 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,475 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,475 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,475 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,476 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,476 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,476 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,476 root INFO copying build/lib.linux-i686-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-i686/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:47,477 root INFO creating build/bdist.linux-i686/wheel/Bio/CAPS
2025-04-24 08:22:47,477 root INFO copying build/lib.linux-i686-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-i686/wheel/./Bio/CAPS
2025-04-24 08:22:47,477 root INFO creating build/bdist.linux-i686/wheel/Bio/Alphabet
2025-04-24 08:22:47,477 root INFO copying build/lib.linux-i686-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Alphabet
2025-04-24 08:22:47,478 root INFO creating build/bdist.linux-i686/wheel/Bio/GenBank
2025-04-24 08:22:47,478 root INFO copying build/lib.linux-i686-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-i686/wheel/./Bio/GenBank
2025-04-24 08:22:47,478 root INFO copying build/lib.linux-i686-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-i686/wheel/./Bio/GenBank
2025-04-24 08:22:47,478 root INFO copying build/lib.linux-i686-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-i686/wheel/./Bio/GenBank
2025-04-24 08:22:47,479 root INFO copying build/lib.linux-i686-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-i686/wheel/./Bio/GenBank
2025-04-24 08:22:47,479 root INFO creating build/bdist.linux-i686/wheel/Bio/PDB
2025-04-24 08:22:47,479 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,480 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,480 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,480 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,481 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,481 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,481 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,481 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,482 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,482 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,482 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,482 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,483 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,483 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/ccealign.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,483 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,484 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,484 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,484 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,484 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,485 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,485 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,485 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,485 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,486 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,486 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,486 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,486 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,487 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,487 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,487 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,487 root INFO creating build/bdist.linux-i686/wheel/Bio/PDB/mmtf
2025-04-24 08:22:47,488 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-i686/wheel/./Bio/PDB/mmtf
2025-04-24 08:22:47,488 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-i686/wheel/./Bio/PDB/mmtf
2025-04-24 08:22:47,488 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-i686/wheel/./Bio/PDB/mmtf
2025-04-24 08:22:47,488 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,489 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,489 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,489 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,489 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/kdtrees.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,490 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,490 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,490 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,490 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,491 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,491 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,491 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,492 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/_bcif_helper.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,492 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,492 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,493 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,493 root INFO copying build/lib.linux-i686-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-i686/wheel/./Bio/PDB
2025-04-24 08:22:47,493 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO
2025-04-24 08:22:47,493 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/InterproscanIO
2025-04-24 08:22:47,494 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/InterproscanIO
2025-04-24 08:22:47,494 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/InterproscanIO
2025-04-24 08:22:47,494 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO
2025-04-24 08:22:47,495 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/BlastIO
2025-04-24 08:22:47,495 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/BlastIO
2025-04-24 08:22:47,495 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/BlastIO
2025-04-24 08:22:47,496 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/BlastIO
2025-04-24 08:22:47,496 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO
2025-04-24 08:22:47,496 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO
2025-04-24 08:22:47,496 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO
2025-04-24 08:22:47,497 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/_model
2025-04-24 08:22:47,497 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:47,497 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:47,497 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:47,498 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:47,498 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:47,498 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/HmmerIO
2025-04-24 08:22:47,499 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:47,499 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:47,499 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:47,499 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:47,500 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:47,500 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:47,500 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:47,501 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:47,501 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:47,501 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:47,501 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:47,502 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:47,502 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO
2025-04-24 08:22:47,502 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:47,502 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:47,503 root INFO copying build/lib.linux-i686-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-i686/wheel/./Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:47,503 root INFO creating build/bdist.linux-i686/wheel/Bio/SeqUtils
2025-04-24 08:22:47,503 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-i686/wheel/./Bio/SeqUtils
2025-04-24 08:22:47,504 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-i686/wheel/./Bio/SeqUtils
2025-04-24 08:22:47,504 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SeqUtils
2025-04-24 08:22:47,504 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-i686/wheel/./Bio/SeqUtils
2025-04-24 08:22:47,504 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-i686/wheel/./Bio/SeqUtils
2025-04-24 08:22:47,505 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-i686/wheel/./Bio/SeqUtils
2025-04-24 08:22:47,505 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-i686/wheel/./Bio/SeqUtils
2025-04-24 08:22:47,505 root INFO copying build/lib.linux-i686-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,506 root INFO creating build/bdist.linux-i686/wheel/Bio/Emboss
2025-04-24 08:22:47,506 root INFO copying build/lib.linux-i686-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-i686/wheel/./Bio/Emboss
2025-04-24 08:22:47,506 root INFO copying build/lib.linux-i686-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Emboss
2025-04-24 08:22:47,506 root INFO copying build/lib.linux-i686-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-i686/wheel/./Bio/Emboss
2025-04-24 08:22:47,507 root INFO copying build/lib.linux-i686-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-i686/wheel/./Bio/Emboss
2025-04-24 08:22:47,507 root INFO copying build/lib.linux-i686-cpython-312/Bio/py.typed -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,507 root INFO creating build/bdist.linux-i686/wheel/Bio/SCOP
2025-04-24 08:22:47,507 root INFO copying build/lib.linux-i686-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-i686/wheel/./Bio/SCOP
2025-04-24 08:22:47,508 root INFO copying build/lib.linux-i686-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-i686/wheel/./Bio/SCOP
2025-04-24 08:22:47,508 root INFO copying build/lib.linux-i686-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-i686/wheel/./Bio/SCOP
2025-04-24 08:22:47,508 root INFO copying build/lib.linux-i686-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-i686/wheel/./Bio/SCOP
2025-04-24 08:22:47,508 root INFO copying build/lib.linux-i686-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SCOP
2025-04-24 08:22:47,509 root INFO copying build/lib.linux-i686-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-i686/wheel/./Bio/SCOP
2025-04-24 08:22:47,509 root INFO copying build/lib.linux-i686-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-i686/wheel/./Bio/SCOP
2025-04-24 08:22:47,509 root INFO creating build/bdist.linux-i686/wheel/Bio/Pathway
2025-04-24 08:22:47,510 root INFO creating build/bdist.linux-i686/wheel/Bio/Pathway/Rep
2025-04-24 08:22:47,510 root INFO copying build/lib.linux-i686-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Pathway/Rep
2025-04-24 08:22:47,510 root INFO copying build/lib.linux-i686-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-i686/wheel/./Bio/Pathway/Rep
2025-04-24 08:22:47,510 root INFO copying build/lib.linux-i686-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-i686/wheel/./Bio/Pathway/Rep
2025-04-24 08:22:47,511 root INFO copying build/lib.linux-i686-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Pathway
2025-04-24 08:22:47,511 root INFO copying build/lib.linux-i686-cpython-312/Bio/File.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,511 root INFO creating build/bdist.linux-i686/wheel/Bio/motifs
2025-04-24 08:22:47,511 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,512 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/_pwm.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,512 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,512 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,512 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,513 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,513 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,513 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,514 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,514 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,514 root INFO creating build/bdist.linux-i686/wheel/Bio/motifs/jaspar
2025-04-24 08:22:47,514 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-i686/wheel/./Bio/motifs/jaspar
2025-04-24 08:22:47,515 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-i686/wheel/./Bio/motifs/jaspar
2025-04-24 08:22:47,515 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,515 root INFO creating build/bdist.linux-i686/wheel/Bio/motifs/applications
2025-04-24 08:22:47,515 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-i686/wheel/./Bio/motifs/applications
2025-04-24 08:22:47,516 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-i686/wheel/./Bio/motifs/applications
2025-04-24 08:22:47,516 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,516 root INFO copying build/lib.linux-i686-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-i686/wheel/./Bio/motifs
2025-04-24 08:22:47,516 root INFO copying build/lib.linux-i686-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,517 root INFO creating build/bdist.linux-i686/wheel/Bio/SVDSuperimposer
2025-04-24 08:22:47,517 root INFO copying build/lib.linux-i686-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-i686/wheel/./Bio/SVDSuperimposer
2025-04-24 08:22:47,517 root INFO creating build/bdist.linux-i686/wheel/Bio/Nexus
2025-04-24 08:22:47,518 root INFO copying build/lib.linux-i686-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-i686/wheel/./Bio/Nexus
2025-04-24 08:22:47,518 root INFO copying build/lib.linux-i686-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-i686/wheel/./Bio/Nexus
2025-04-24 08:22:47,518 root INFO copying build/lib.linux-i686-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Nexus
2025-04-24 08:22:47,518 root INFO copying build/lib.linux-i686-cpython-312/Bio/Nexus/cnexus.cpython-312-i386-linux-musl.so -> build/bdist.linux-i686/wheel/./Bio/Nexus
2025-04-24 08:22:47,519 root INFO copying build/lib.linux-i686-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-i686/wheel/./Bio/Nexus
2025-04-24 08:22:47,519 root INFO copying build/lib.linux-i686-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-i686/wheel/./Bio/Nexus
2025-04-24 08:22:47,519 root INFO copying build/lib.linux-i686-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-i686/wheel/./Bio/Nexus
2025-04-24 08:22:47,520 root INFO creating build/bdist.linux-i686/wheel/Bio/AlignIO
2025-04-24 08:22:47,520 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,520 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,520 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,521 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,521 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,521 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,522 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,522 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,522 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,522 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,523 root INFO copying build/lib.linux-i686-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-i686/wheel/./Bio/AlignIO
2025-04-24 08:22:47,523 root INFO copying build/lib.linux-i686-cpython-312/Bio/bgzf.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,523 root INFO creating build/bdist.linux-i686/wheel/Bio/Affy
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2025-04-24 08:22:47,524 root INFO copying build/lib.linux-i686-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-i686/wheel/./Bio/Affy
2025-04-24 08:22:47,524 root INFO creating build/bdist.linux-i686/wheel/Bio/Compass
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2025-04-24 08:22:47,525 root INFO copying build/lib.linux-i686-cpython-312/Bio/pairwise2.py -> build/bdist.linux-i686/wheel/./Bio
2025-04-24 08:22:47,525 root INFO creating build/bdist.linux-i686/wheel/Bio/Data
2025-04-24 08:22:47,525 root INFO copying build/lib.linux-i686-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-i686/wheel/./Bio/Data
2025-04-24 08:22:47,525 root INFO copying build/lib.linux-i686-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-i686/wheel/./Bio/Data
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2025-04-24 08:22:47,526 root INFO copying build/lib.linux-i686-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-i686/wheel/./Bio/Data
2025-04-24 08:22:47,526 root INFO creating build/bdist.linux-i686/wheel/Bio/Blast
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2025-04-24 08:22:47,528 root INFO copying build/lib.linux-i686-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-i686/wheel/./Bio/Blast
2025-04-24 08:22:47,529 root INFO creating build/bdist.linux-i686/wheel/Bio/NMR
2025-04-24 08:22:47,529 root INFO copying build/lib.linux-i686-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-i686/wheel/./Bio/NMR
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2025-04-24 08:22:47,529 root INFO copying build/lib.linux-i686-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-i686/wheel/./Bio/NMR
2025-04-24 08:22:47,530 root INFO creating build/bdist.linux-i686/wheel/BioSQL
2025-04-24 08:22:47,530 root INFO copying build/lib.linux-i686-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-i686/wheel/./BioSQL
2025-04-24 08:22:47,530 root INFO copying build/lib.linux-i686-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-i686/wheel/./BioSQL
2025-04-24 08:22:47,531 root INFO copying build/lib.linux-i686-cpython-312/BioSQL/__init__.py -> build/bdist.linux-i686/wheel/./BioSQL
2025-04-24 08:22:47,531 root INFO copying build/lib.linux-i686-cpython-312/BioSQL/py.typed -> build/bdist.linux-i686/wheel/./BioSQL
2025-04-24 08:22:47,531 root INFO copying build/lib.linux-i686-cpython-312/BioSQL/Loader.py -> build/bdist.linux-i686/wheel/./BioSQL
2025-04-24 08:22:47,531 root INFO copying build/lib.linux-i686-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-i686/wheel/./BioSQL
2025-04-24 08:22:47,532 root INFO running install_egg_info
2025-04-24 08:22:47,537 root INFO Copying biopython.egg-info to build/bdist.linux-i686/wheel/./biopython-1.85-py3.12.egg-info
2025-04-24 08:22:47,539 root INFO running install_scripts
2025-04-24 08:22:47,546 root INFO creating build/bdist.linux-i686/wheel/biopython-1.85.dist-info/WHEEL
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2025-04-24 08:22:47,796 root INFO removing build/bdist.linux-i686/wheel
2025-04-24 08:22:47,813 gpep517 INFO The backend produced .dist/biopython-1.85-cp312-cp312-linux_i686.whl
biopython-1.85-cp312-cp312-linux_i686.whl
>>> py3-biopython: Entering fakeroot...
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython-pyc*: Scanning shared objects
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
>>> py3-biopython-pyc*: Package size: 6.4 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.85-r0.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
	so:libc.musl-x86.so.1
>>> py3-biopython*: Package size: 11.2 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.85-r0.apk
>>> py3-biopython: Build complete at Thu, 24 Apr 2025 08:22:51 +0000 elapsed time 0h 0m 23s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Uninstalling dependencies...
(1/30) Purging .makedepends-py3-biopython (20250424.082229)
(2/30) Purging py3-gpep517-pyc (16-r0)
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(4/30) Purging py3-installer-pyc (0.7.0-r2)
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(6/30) Purging py3-setuptools-pyc (77.0.3-r0)
(7/30) Purging py3-setuptools (77.0.3-r0)
(8/30) Purging py3-wheel-pyc (0.43.0-r0)
(9/30) Purging py3-wheel (0.43.0-r0)
(10/30) Purging py3-packaging-pyc (24.2-r0)
(11/30) Purging py3-packaging (24.2-r0)
(12/30) Purging py3-parsing-pyc (3.2.0-r0)
(13/30) Purging py3-parsing (3.2.0-r0)
(14/30) Purging py3-numpy-dev (2.2.4-r0)
(15/30) Purging py3-numpy-tests (2.2.4-r0)
(16/30) Purging py3-numpy-pyc (2.2.4-r0)
(17/30) Purging py3-numpy (2.2.4-r0)
(18/30) Purging openblas (0.3.28-r0)
(19/30) Purging python3-dev (3.12.10-r0)
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(21/30) Purging python3-pycache-pyc0 (3.12.10-r0)
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(24/30) Purging gdbm (1.24-r0)
(25/30) Purging libffi (3.4.8-r0)
(26/30) Purging libgfortran (14.2.0-r5)
(27/30) Purging libpanelw (6.5_p20250412-r0)
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(29/30) Purging mpdecimal (4.0.0-r0)
(30/30) Purging sqlite-libs (3.49.1-r0)
Executing busybox-1.37.0-r16.trigger
OK: 405 MiB in 118 packages
>>> py3-biopython: Updating the community/x86 repository index...
>>> py3-biopython: Signing the index...